Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
normalized counts
•
reset
1
vote
2
replies
1.1k
views
scran/scater Normalized matrix
scran
scater
normalized counts
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
Radek
▴ 90
0
votes
2
replies
1.0k
views
Get normalized COUNTS Deseq2
deseq2
normalized counts
updated 5.4 years ago by
Steve Lianoglou
★ 13k • written 5.4 years ago by
anaQ
• 0
0
votes
0
replies
1.4k
views
DESeq2: Extract mean normalized log2 counts by level
normalized counts
log2
5.6 years ago
agdif
▴ 10
4
votes
2
replies
7.8k
views
DESeq2 : normalized counts
rnaseq
deseq2
normalized counts
updated 5.9 years ago by
Michael Love
41k • written 5.9 years ago by
JoannaF
▴ 10
0
votes
14
replies
4.3k
views
DESeq2 count normalization
deseq2
normalization
normalized counts
updated 6.1 years ago by
Michael Love
41k • written 6.1 years ago by
naets_matthias
• 0
1
vote
4
replies
1.5k
views
Normalized counts after fitting linear model with batch effects - edgeR
edger
batch effect
normalized counts
updated 6.3 years ago by
Ryan C. Thompson
★ 7.9k • written 6.3 years ago by
Yahan
• 0
4
votes
2
replies
1.3k
views
Normalize to additional variable (brain weight) in DESeq2
deseq2
cqn
normalization
normalized counts
updated 6.5 years ago by
Michael Love
41k • written 6.5 years ago by
mark.ebbert
• 0
2
votes
1
reply
1.0k
views
Problems with Edge R normalization in same sample but using different ref genomes.
normalized counts
grch37
grch38
r bioconductor
6.6 years ago
salvocomplicazioni1
• 0
1
vote
2
replies
1.6k
views
cn.MOPS - reporting log normalized read counts as table
cn.mops
log
normalized counts
table
updated 6.8 years ago by
Günter Klambauer
▴ 540 • written 6.8 years ago by
falk.zakrzewski
• 0
1
vote
3
replies
1.4k
views
DESeq2: Do basemean values take into account interaction effects?
deseq2
counts
normalized counts
updated 7.8 years ago by
Steve Lianoglou
★ 13k • written 7.8 years ago by
snamjoshi87
▴ 40
2
votes
2
replies
1.8k
views
Analysis of shRNA screen data
shrna
edger
deseq2
differential expression
normalized counts
7.8 years ago
Jane Merlevede
▴ 90
1
vote
6
replies
2.6k
views
Diffbind EdgeR and DESeq2 normalization
diffbind
normalized counts
7.8 years ago
GFM
▴ 20
12 results • Page
1 of 1
Recent ...
Replies
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga
by
James W. MacDonald
65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Votes
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
Awards
• All
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Zainab
• 0
Popular Question
to
Theo
▴ 10
Popular Question
to
gene_bioconductor
▴ 10
Popular Question
to
rohitsatyam102
▴ 20
Locations
• All
WEHI, Melbourne, Australia,
just now
United States,
2 minutes ago
United States,
3 minutes ago
United States,
5 minutes ago
United States,
8 minutes ago
Traffic: 645 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6